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1. Enzyme-Finder-Parts Enzyme-Finder-Parts Public

   A Repo of various Python pipelines to find enzyme homologues.

   Jupyter Notebook 1

2. ProteinProteinInteractions_Finches-filtering_AF3-prediction ProteinProteinInteractions_Finches-filtering_AF3-prediction Public

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3. Fingersweat-Normalization-Approach Fingersweat-Normalization-Approach Public

   An R-based pipeline for omics data normalization, leveraging Bayesian optimization and combinatorial approaches, including robust data preparation and visualization tools.

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4. omics-data-analysis-pipeline omics-data-analysis-pipeline Public

   An R-based pipeline for comprehensive omics data analysis, including data processing, statistical tests, and visualization. Originally developed for LC-MS metabolomics data, it is designed to be ad…

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5. UniProt_to_NCBI_geneneighborhood_pipeline UniProt_to_NCBI_geneneighborhood_pipeline Public

   A pipeline for phylogenetic enzyme homology searches, identifying genes in genomic neighborhoods from UniProt IDs using UniProt and NCBI APIs.

   Jupyter Notebook

6. Protein-pocket-search-with-Cys-mutations Protein-pocket-search-with-Cys-mutations Public

   A Python-based toolkit leveraging the Schrödinger API for in silico protein mutation to Cysteine and subsequent prediction of key physicochemical properties (SASA, energy, stability, pKa) to identi…

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