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idea: substructure fragmenter based on Sharma and King functional groups

Status: Open.

#222 In FelixBaensch/MORTAR;

· JonasSchaub opened on Mar 30, 2026

Add a substructure fragmenter that basically does a substructure search for a set of supplied SMARTS strings

Status: Open.

#221 In FelixBaensch/MORTAR;

· JonasSchaub opened on Mar 27, 2026

Potentially move optional(!) aromaticity detection before fragmentation to the global settings (preferences) since basically every fragmenter would work without it but it also always influences the results

Status: Open.

#220 In FelixBaensch/MORTAR;

· JonasSchaub opened on Mar 26, 2026

idea: include CDK InChITautomerGenerator as a "fragmentation" algorithm

Status: Open.

#215 In FelixBaensch/MORTAR;

· JonasSchaub opened on Feb 6, 2026

Update Java to v25 (new LTS release)

Status: Open.

#203 In FelixBaensch/MORTAR;

· JonasSchaub opened on Nov 13, 2025

idea: implement preprocessing for Ertl fragmenter that extracts aromatic heteroatoms together with their rings to prevent "pseudo-aromatic" fragments

Status: Open.

#201 In FelixBaensch/MORTAR;

· JonasSchaub opened on Oct 17, 2025

Harmonise context menu

Status: Open.

#193 In FelixBaensch/MORTAR;

· JonasSchaub opened on Sep 16, 2025

Look into app signing for Win and Mac to prevent security warnings at installation

Status: Open.

#192 In FelixBaensch/MORTAR;

· JonasSchaub opened on Sep 3, 2025

Idea: export CSV button in histogram view

Status: Open.

#191 In FelixBaensch/MORTAR;

· JonasSchaub opened on Sep 3, 2025

Idea: in enlarged structure view of overview, add list or table with descriptor values for the respective molecule

Status: Open.

#190 In FelixBaensch/MORTAR;

· JonasSchaub opened on Sep 3, 2025

Idea: a drop down box with all available fragmentation algorithms next to the "fragment" button in the molecules tab

Status: Open.

#189 In FelixBaensch/MORTAR;

· JonasSchaub opened on Sep 3, 2025

Clustering integration

enhancementNew feature or requestNew feature or request

Status: Open.

#188 In FelixBaensch/MORTAR;

· JonasSchaub opened on Sep 3, 2025

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MORTAR v2.0.0