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…els") fixes: #72 + unit test updates
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Pull request overview
This release adds comprehensive vignettes for multilevel meta-analysis capabilities, improves model summary functionality for spike-and-slab algorithm fits, and enhances z-curve plotting control.
- New "Explanation" vignette providing navigation guide through all package vignettes
- Two new vignettes demonstrating multilevel robust Bayesian meta-analysis and meta-regression with real data examples
- Enhanced
summary()function to provide publication bias model type summaries for models fitted withalgorithm = "ss" - Improved plotting control for z-curve visualizations with additional graphical parameters
Reviewed changes
Copilot reviewed 31 out of 89 changed files in this pull request and generated no comments.
Show a summary per file
| File | Description |
|---|---|
| vignettes/Explanation.Rmd | New guide vignette helping users navigate to appropriate analysis documentation |
| vignettes/MultilevelRoBMA.Rmd | New vignette demonstrating multilevel meta-analysis with the Johnides2025 dataset |
| vignettes/MultilevelRoBMARegression.Rmd | New vignette showing multilevel meta-regression with prior rescaling for non-standardized effect sizes |
| vignettes/ZCurveDiagnostics.Rmd | Fixed duplicate code lines in legend example |
| tests/testthat/test-05-methods.R | Updated tests to exclude spike-and-slab models from certain summary checks |
| tests/results/summary.models/9.txt | Removed test reference file for spike-and-slab model summary |
| man/lines.zcurve_RoBMA.Rd | Updated documentation with clearer parameter descriptions for plotting |
| tests/testthat/_snaps/06-plots/*.svg | Updated plot snapshots reflecting minor precision changes in rendering |
| tests/testthat/_snaps/11-zcurve/*.svg | Updated z-curve plot snapshots with improved histogram rendering (rect vs polygon) |
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Features
Explanationvignette that helps navigate users through the vignettessummary()function now provides publication bias model type summary (type = "models") for models fitted usingalgorithm = "ss"plot.zcurve_RoBMA(i.e., specifying col, border, etc for the individual elements)fixes: #72