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Bug fixes for Inter_Session_Constellation_align.m#1
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mgaffney-mcw wants to merge 300 commits intoEurybiadan:masterfrom
Open
Bug fixes for Inter_Session_Constellation_align.m#1mgaffney-mcw wants to merge 300 commits intoEurybiadan:masterfrom
mgaffney-mcw wants to merge 300 commits intoEurybiadan:masterfrom
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…o modular_refactor # Conflicts: # ORG_Calculation/Utility/MEAO_Processing_Pipeline/Residual_Torsion_Removal_Pipl.m
… to handle grayscale and non grayscale data, and switch to cols/rows for warping to ensure correct shape.
…o modular_refactor # Conflicts: # ORG_Calculation/MEAO_iORG.m # ORG_Calculation/PreProcessing/standardize_temporal_profiles.m # ORG_Calculation/Utility/MEAO_Processing_Pipeline/load_pipelined_MEAO_data.m
…). Updated pipeline to be reckless with its frame inclusions, as 760 images just don't correlate nicely.
Added more standardization methods. Added population iORG.
…ween datasets types.
…ion iORG function.
…for 1D arrays, made a Point class.
…ative. Updated all default selections for ARVO use (mean-based frame normalization, rms-based summarization).
…s for easy plotting.
…cs. Relaxed some rules in the pipeline, and checked some cone bleaching kinetics for ARVO2022.
…o modular_refactor
…nts.txt not having opencv on it.
…ssues with overlap when looking at multiple locations.
…e-running dataset for paper.
…tricities relative to a normative dataset.
Bug fix to correct indexing errors that occur when aligning multiple images to the same reference frame.
…lation_align Adding all the support functions to this branch from Master
....doesn't work well with using video mean pixel intensity as a seed point because the crappy frames are influencing the mean. Also there should be a difference between pre and post stimulus mean so that should probably be taken into account too...
…I'm no longer an idiot
…r (first row) for the cell_pwr_iORG spreadsheets but keeping the first row for the stim train file...
…o pre and post stimulus segments and calculating correlations/displaying histograms
…s svg and png formatting and outputting correlation data into csv(s) and identifying a save location and trial type in a super janky way.
…h the axes for 760 vs confocal are both maxed out. (Left Y-axis 760nm and Right Y-axis confocal)
…put desired string for labeling each condition on the plot
a script meant to identify where desync errors between 760 and confocal
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Bug fix to correct indexing errors that occur when aligning multiple images to the same reference frame in 'Inter_Session_Constellation_align.m'.