Merge AgroPortal API 3.1.0

.github/workflows/ruby-unit-tests.yml

@@ -28,6 +28,7 @@ jobs:
           bundler-cache: true # runs 'bundle install' and caches installed gems automatically
       - name: Run unit tests
         run: |
+          cp .env.sample .env
           ci_env=`bash <(curl -s https://codecov.io/env)`
           GOO_SLICES=${{ matrix.goo-slice }} bundle exec rake test:docker:${{ matrix.triplestore }}
 

Capfile

@@ -22,6 +22,5 @@ require 'capistrano/bundler'
 # require 'capistrano/rails/assets'
 # require 'capistrano/rails/migrations'
 require 'capistrano/locally'
-require 'new_relic/recipes' # announce deployments in NewRelic
 # Loads custom tasks from `lib/capistrano/tasks' if you have any defined.
 Dir.glob('lib/capistrano/tasks/*.cap').each { |r| import r }

Gemfile

@@ -17,7 +17,7 @@ end
 
 gem 'request_store'
 gem 'parallel'
-gem 'google-protobuf'
+gem 'google-protobuf', '~> 4.30.0'
 gem 'net-ftp'
 gem 'json-ld', '~> 3.2.0'
 gem 'rdf-raptor', github:'ruby-rdf/rdf-raptor', ref: '6392ceabf71c3233b0f7f0172f662bd4a22cd534' # use version 3.3.0 when available
@@ -38,7 +38,7 @@ gem 'redis'
 gem 'redis-store'
 
 # Monitoring
-gem 'newrelic_rpm', group: [:default, :deployment]
+gem "sentry-ruby", "~> 5.24"
 
 # HTTP server
 gem 'unicorn'
@@ -53,7 +53,7 @@ gem 'pandoc-ruby'
 gem 'ncbo_annotator', git: 'https://github.com/ontoportal-lirmm/ncbo_annotator.git', branch: 'development'
 gem 'ncbo_cron', git: 'https://github.com/ontoportal-lirmm/ncbo_cron.git', branch: 'master'
 gem 'ncbo_ontology_recommender', git: 'https://github.com/ontoportal-lirmm/ncbo_ontology_recommender.git', branch: 'development'
-gem 'ontologies_linked_data', github: 'earthportal/ontologies_linked_data', branch: 'feature/projects'
+gem 'ontologies_linked_data', github: 'earthportal/ontologies_linked_data', branch: 'development'
 gem 'goo', github: 'ontoportal-lirmm/goo', branch: 'development'
 gem 'sparql-client', github: 'ontoportal-lirmm/sparql-client', branch: 'development'
 
@@ -90,4 +90,4 @@ group :test do
   gem 'simplecov-cobertura' # for codecov.io
   gem 'webmock'
   gem 'webrick'
-end
+end