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This is a systematic change in how data will be collected from JGI.

Rather than prompting the web for the entire database, this update will assume the User has gone to the IMG/M portal, and acquired metadata for the genomes/metagenomes they want. This data will be used to retrive the relavant information, including the KOs and ECs that appear in the genome.

colemathis and others added 30 commits September 29, 2022 17:15
…x. This failed on the first try (I think it timed out waiting for firefox to launch), and succeeded on the second (once firefox had launched). More work needed.
…a command to wait for the webdriver to confirm page is ready
Making room for actual demo NB
…raping as this is now available in bulk download
…oaded 03-25-2023; avoids the need to visit main metagenome page during data import
…e of EC/KO list is known from JGI bulk-download metadata file
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3 participants