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10 changes: 10 additions & 0 deletions eitprocessing/filters/butterworth_filters.py
Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
import sys
from dataclasses import InitVar, dataclass
from typing import Literal

Expand Down Expand Up @@ -142,6 +143,15 @@ def apply_filter(self, input_data: npt.ArrayLike, axis: int = -1) -> np.ndarray:
Returns:
The filtered output with the same shape as the input data.
"""
if np.any(np.isnan(input_data)):
msg = "Input data contains NaN-values."
exc = ValueError(msg)
if sys.version_info >= (3, 11):
exc.add_note(
"Butterworth filters can't handle data containing NaN-values. "
"You can fill in gaps using `np.nan_to_num(...)` or interpolation."
)
raise exc
sos = signal.butter(
N=self.order,
Wn=self.cutoff_frequency,
Expand Down
11 changes: 11 additions & 0 deletions tests/test_butterworth_filter.py
Original file line number Diff line number Diff line change
Expand Up @@ -286,3 +286,14 @@ def compare_filters(
signal_,
axis,
)


def test_nan_values(filter_arguments: dict):
filter_ = ButterworthFilter(**filter_arguments)
data = np.random.default_rng().random(1000)

_ = filter_.apply_filter(data)

data[100] = np.nan
with pytest.raises(ValueError):
_ = filter_.apply_filter(data)
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