minos-1.8.0

Changes include:

• Renamed release files in the results folder for uniformity
• Added scoring.yaml, run_config.yaml, and mikado_config.yaml to the results folder so that when minos is restart modified scoring files with --rerun-from, the archives directory stores the earlier run configs.
• Added singularity definition files, minos/etc/Singularity.tools.def and minos/etc/Singularity.busco.def, for easy installation of minos dependency tools
• Updated default mikado to v2.1.1
• CPC2.py is now CPC2 - https://github.com/EI-CoreBioinformatics/CPC2. Revert this commit to make minos backwards compatible
• Fixed: Check requirement for kallisto #37
• Fixed: Silent BUSCO count error with certain datasets #52

minos-1.7.2

Changes include:

• Fix BUSCO_TABLE NameError #48
• BUSCO now off by default. Thanks @lucventurini
• Added defaults to help option
• Added checks on --busco-lineage requirement with --busco-level
• Removed busco protein hmmer_output files to save space

1.7.1

Bug fix release by @gemygk:

• Removed use of the protected word "copy" from the snakemake
• Now Minos reports correctly the features of ncRNAs

1.7.0

Easier, saner installation of CPC2.

conda-rific

towards a proper conda installation

v1.5.1_with_lgpl3

Create LICENSE

1.5_minos

This is the first release after renaming to minos.

v1.4.2.1

same as v1.4.2 just with different snakemake requirement

1.4.2

This is the initial release now in production at EI.