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EI-CoreBioinformatics / mikado Public

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Fix/issue 469#470

Merged

gemygk merged 10 commits intomasterEI-CoreBioinformatics/mikado:masterfrom

fix/issue-469EI-CoreBioinformatics/mikado:fix/issue-469Copy head branch name to clipboard

Dec 3, 2025

Conversation Commits10 (10)Checks Files changed

Merged

Fix/issue 469#470
gemygk merged 10 commits intomasterfrom
fix/issue-469

Commits

Commits on Nov 28, 2025

chore: format with ruff
gemygk
committed
fix: prevent treating NNN as a stop codon #469
gemygk
committed
fix: update gh actions
gemygk
committed

Commits on Dec 1, 2025

chore: format with ruff
gemygk
committed
feat: update unittest for the NNN change #469
gemygk
committed
fix: update gh actions
gemygk
committed

Commits on Dec 3, 2025

fix: fix error with libmamba Could not solve for environment specs, update to pysam==0.23.3 and diamond==2.1.16 and removed channels - anaconda, defaults
gemygk
committed
feat(ci): update gh actions codeql-analysis.yml
gemygk
committed
feat: pin versions in pyproject.toml
gemygk
committed
feat(ci): start using mamba-org/setup-micromamba instead of conda-incubator/setup-miniconda
gemygk
committed

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