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Mouse Visual Coding

In this repository I am developing my code in python for functional connectivity analysis based on local field potential recordings of mouse visual cortex.

Here I use a publicly available dataset from Allen Brain institute: https://portal.brain-map.org/explore/circuits/visual-coding-neuropixels

You need to first install Allen SDK: https://allensdk.readthedocs.io/en/latest/install.html and download the data from there.

For Functional connectivity analysis you will need pydynet toolbox: https://github.com/joanrue/pydynet

For more details, check Wiki

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In this repo I will develop my code for mouse visual coding in python

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