EVA-3737 - Monitor rs accessions #175
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nitin-ebi
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Jan 31, 2025
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| java -Xmx6G -jar $params.clustering_jar --spring.config.location=file:$params.clustering_properties \ | ||
| --spring.batch.job.names=DUPLICATE_RS_ACC_QC_JOB --parameters.rsAccFile=$accession_chunk \ | ||
| --parameters.duplicateRSAccFile=$duplicate_accession_chunk |
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| java -Xmx6G -jar $params.clustering_jar --spring.config.location=file:$params.clustering_properties \ | |
| --spring.batch.job.names=DUPLICATE_RS_ACC_QC_JOB --parameters.rsAccFile=$accession_chunk \ | |
| --parameters.duplicateRSAccFile=$duplicate_accession_chunk | |
| java -Xmx6G -jar $params.clustering_jar --spring.config.location=file:$params.clustering_properties \ | |
| --spring.batch.job.names=DUPLICATE_RS_ACC_QC_JOB --parameters.rsAccFile=$accession_chunk \ | |
| --parameters.duplicateRSAccFile=$duplicate_accession_chunk | |
| --parameters.runId=$(date +%s) |
For the duplicate job issue, we can try adding a new parameter to make the job unique
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If they all start at the same time this would not be unique would it ?
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Automation to monitor RS duplicate accession