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Preparing for release 5.3.13#770

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theisuru merged 42 commits intomasterfrom
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Oct 9, 2025
Merged

Preparing for release 5.3.13#770
theisuru merged 42 commits intomasterfrom
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@theisuru theisuru commented Oct 9, 2025

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dipayan1985 and others added 30 commits March 27, 2025 14:52
…into BSD-2375

# Conflicts:
#	agents/solr/pom.xml
#	agents/uploadworkers/pom.xml
#	client/starter/pom.xml
#	commons/pom.xml
#	core/pom.xml
#	models/mongo/pom.xml
#	pipelines/analytics/pom.xml
#	pipelines/chain/pom.xml
#	pipelines/copydown/pom.xml
#	pipelines/curami/pom.xml
#	pipelines/curation/pom.xml
#	pipelines/export/pom.xml
#	pipelines/ncbi/pom.xml
#	pipelines/reindex/pom.xml
#	pipelines/sample-post-release-action/pom.xml
#	pipelines/sample-transformation-dtol/pom.xml
#	pipelines/taxonimport/pom.xml
#	pipelines/zooma/pom.xml
#	utils/client/pom.xml
#	utils/ols/pom.xml
#	utils/pipeline/pom.xml
#	utils/validation/pom.xml
#	webapps/core-v2/pom.xml
#	webapps/core/pom.xml
Minikube deployment and testing
Utility to change sample authority from AAP to Webin
…into BSD-2375

# Conflicts:
#	agents/pom.xml
#	agents/solr/pom.xml
#	agents/uploadworkers/pom.xml
#	client/client/pom.xml
#	client/pom.xml
#	client/starter/pom.xml
#	commons/pom.xml
#	core/src/main/java/uk/ac/ebi/biosamples/core/service/CharacteristicSerializer.java
#	core/src/main/java/uk/ac/ebi/biosamples/service/taxonomy/TaxonomyClientService.java
#	core/src/main/java/uk/ac/ebi/biosamples/utils/upload/FileUploadUtils.java
#	docker-agents.sh
#	docker-compose.yml
#	docker-integration.big.sh
#	docker-integration.sh
#	docker-test.sh
#	integration/pom.xml
#	messaging/pom.xml
#	models/core/pom.xml
#	models/curami/pom.xml
#	models/jsonld/pom.xml
#	models/mongo/pom.xml
#	models/neo4j/pom.xml
#	models/pom.xml
#	models/security/pom.xml
#	models/sitemap/pom.xml
#	models/solr/pom.xml
#	pipelines/analytics/pom.xml
#	pipelines/chain/pom.xml
#	pipelines/chain/src/main/java/uk/ac/ebi/biosamples/HelpdeskActionApplicationRunner.java
#	pipelines/common/pom.xml
#	pipelines/common/src/main/java/uk/ac/ebi/biosamples/service/EraProDao.java
#	pipelines/copydown/pom.xml
#	pipelines/curami/pom.xml
#	pipelines/curation/pom.xml
#	pipelines/ena/pom.xml
#	pipelines/export/pom.xml
#	pipelines/ncbi-ena-link/pom.xml
#	pipelines/ncbi/pom.xml
#	pipelines/neoexport/pom.xml
#	pipelines/pom.xml
#	pipelines/reindex/pom.xml
#	pipelines/sample-post-release-action/pom.xml
#	pipelines/sample-release/pom.xml
#	pipelines/sample-transformation-dtol/pom.xml
#	pipelines/taxonimport/pom.xml
#	pipelines/zooma/pom.xml
#	pom.xml
#	properties/pom.xml
#	utils/client/pom.xml
#	utils/ols/pom.xml
#	utils/pom.xml
#	utils/thread/pom.xml
#	utils/validation/pom.xml
#	utils/webapp/pom.xml
#	webapps/core-v2/pom.xml
#	webapps/core/pom.xml
#	webapps/core/src/main/java/uk/ac/ebi/biosamples/service/SampleService.java
#	webapps/pom.xml
create module core and move submodules under utils as packages to cor…
dependabot bot and others added 12 commits July 29, 2025 12:18
Bumps [org.springframework.hateoas:spring-hateoas](https://github.com/spring-projects/spring-hateoas) from 1.3.4 to 1.5.5.
- [Release notes](https://github.com/spring-projects/spring-hateoas/releases)
- [Commits](spring-projects/spring-hateoas@1.3.4...1.5.5)

---
updated-dependencies:
- dependency-name: org.springframework.hateoas:spring-hateoas
  dependency-version: 1.5.5
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
fixing character encoding issue for file upload submissions
…/common/org.springframework.hateoas-spring-hateoas-1.5.5

Bump org.springframework.hateoas:spring-hateoas from 1.3.4 to 1.5.5 in /pipelines/common
Bumps [org.springframework.hateoas:spring-hateoas](https://github.com/spring-projects/spring-hateoas) from 1.3.4 to 1.5.5.
- [Release notes](https://github.com/spring-projects/spring-hateoas/releases)
- [Commits](spring-projects/spring-hateoas@1.3.4...1.5.5)

---
updated-dependencies:
- dependency-name: org.springframework.hateoas:spring-hateoas
  dependency-version: 1.5.5
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
…springframework.hateoas-spring-hateoas-1.5.5

Bump org.springframework.hateoas:spring-hateoas from 1.3.4 to 1.5.5 in /core
NcbiEnaLink pipeline changes, spotless changes and RT pipeline changes
@theisuru theisuru merged commit 4592f4d into master Oct 9, 2025
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