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Deplancke's Lab

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  1. BRB-seqTools BRB-seqTools Public

    Suite of tools for processing BRB-seq data

    Java 30 10

  2. ASAP ASAP Public

    ASAP : Automated Single-cell Analysis Pipeline

    27 10

  3. ChromatinHD ChromatinHD Public

    High-definition modeling of chromatin + transcriptomics data

    Python 26

  4. Live-seq Live-seq Public

    Live-seq

    R 9 4

  5. Chromatin_modules Chromatin_modules Public

    Chromatin Modules across cell types.The code

    Jupyter Notebook 4

  6. SSPCI SSPCI Public

    Somatic stem and progenitor cell identification based on single-cell RNA-sequencing data

    R 3

Repositories

Showing 10 of 40 repositories
  • asap_web Public

    ASAP container for hosting the web portal

    DeplanckeLab/asap_web’s past year of commit activity
    JavaScript 1 GPL-3.0 0 1 0 Updated Feb 16, 2026
  • scfair Public

    an initiative to standardize single-cell genomics data and promote findable, accessible, interoperable, and reusable single-cell data.

    DeplanckeLab/scfair’s past year of commit activity
    Ruby 0 0 0 0 Updated Feb 10, 2026
  • asap_run Public

    ASAP container for running all pipeline code

    DeplanckeLab/asap_run’s past year of commit activity
    Java 0 GPL-3.0 0 2 0 Updated Feb 6, 2026
  • ECCB-2026 Public

    SIB Community Days - Single-cell and spatial data FAIRification, community standards and training

    DeplanckeLab/ECCB-2026’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Jan 30, 2026
  • ChromatinHD Public

    High-definition modeling of chromatin + transcriptomics data

    DeplanckeLab/ChromatinHD’s past year of commit activity
    Python 26 MIT 0 9 0 Updated Jan 27, 2026
  • scCM Public

    Benchmarking framework for chromatin module detection across bulk and single-cell modalities (semester project, Deplancke Lab, EPFL)

    DeplanckeLab/scCM’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 22, 2026
  • BRB-seqTools Public

    Suite of tools for processing BRB-seq data

    DeplanckeLab/BRB-seqTools’s past year of commit activity
    Java 30 10 0 0 Updated Jan 19, 2026
  • TF-seq Public

    Material and source code for TF-seq manuscript

    DeplanckeLab/TF-seq’s past year of commit activity
    Jupyter Notebook 3 CC0-1.0 0 1 0 Updated Jan 13, 2026
  • IRIS Public
    DeplanckeLab/IRIS’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Dec 16, 2025
  • Neuro_Droso_ND75KD Public

    ND75KD project

    DeplanckeLab/Neuro_Droso_ND75KD’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Nov 26, 2025
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