v2.1.0

reference checking for comparing alignment files and damage restriction based on ds tag

v2.0.0

Requires Java 17+, as required by htsjdk, now upgraded to 4.1.1.

This release includes a new utility, AlignmentComparison, that checks whether a SAM/BAM/CRAM file contains all of the alignments from set of input SAM/BAM/CRAM files.

v1.11.6

First proper github release with jar