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by storing the grayscale values of the pixels, I will be able to create a thresholding that works for any picture. The pixels are sorted by grayscale value, which means that I can choose a threshold value based on a certain percentage of pixels that are under that value. This guarantees that the colors are separated somewhat equally in every picture, preventing saturation. This might cause problems if an image has a large quantity of big speckles, but I plan on having a way to easily adjust the percentages in cas there is a problem.
finished the adjusted thresholding. I will find a way to make it easier to change the parameters. I also added a way to get a complete thresholding, which will help for images that aren't in focus, since there is a lot of values that we do not want while doing the hough transform.
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my code so far for the hough transform