fcswrite allows you to write .fcs files, a file format used in flow cytometry. Currently, fcswrite partially supports the FCS3.0 file format - Contributions to fcswrite are welcome.
fcswrite was tested (not thoroughly) with these softwares/libraries:
- FlowJo: https://www.flowjo.com/
- Flowing Software: http://flowingsoftware.btk.fi
- fcsparser: https://pypi.org/project/fcsparser/ (and thus FlowCytometryTools)
- Python Flow Cytometry (FCM) Tools: https://pypi.python.org/pypi/fcm (please note that FCM is horribly outdated)
Install with pip:
pip install fcswrite
Requirements:
- Python >= 3.6
- numpy
Running tests
pip install -r tests requirements pytest tests