ChipStream 0.9.9

This release mitigates a memory leak and high CPU usage during idle (when an analysis is complete) and fixes a bug that randomly froze processing when background data was available in the input file.

ChipStream 0.9.8

This is a bugfix release. I resolved an issue with reproducibility when segmentation was done in larger batches on the GPU and I resolved an issue with background processes not terminating after an analysis.

ChipStream 0.9.5

I implemented the first set of optimizations in dcnum to speed-up data processing 🚀.

In addition, the pipeline identifier changed because of a bug in dcnum (DC-analysis/dcnum#47). This means that you should reanalyze previous data if you would like to compare them to data analyzed with ChipStream 0.9.5.

ChipStream 0.8.0

ChipStream 0.8.0 fixes a bug that caused analysis processes to continue (instead of stopping) after the GUI was closed. In addition, ChipStream now writes measurement identifiers in basins which makes it easier for DCOR to identify basin resources within the same dataset.

• fix: when user quits GUI during processing, forcibly kill all processes
• docs: add installation section
• setup: add psutil dependency
• setup: bump dcnum to 0.25.11 (measurement identifiers in basins)

ChipStream 0.7.0

With version 0.7.0, the ChipStream installer now comes with torch/CUDA support.

ChipStream 0.6.8

This is a maintenance release.

0.6.8

• fix: consistently use click.ClickException

0.6.7

• tests: correctly capture stderr instead of stdout (click 8.2)
• setup: bump click to 8.2

0.6.6

• docs: properly employ license GPL-3.0-or-later
• setup: bump dcnum to 0.25.10

ChipStream 0.6.5

This is a maintenance release with improved error messages.

• enh: improve error message when input file is invalid (#13)

ChipStream 0.6.4

This is a maintenance release with added support for new DC table data.

• setup: bump dcnum from 0.25.3 to 0.25.5

ChipStream 0.6.3

This is essentially a maintenance release.

• ref: use dcnum methods to set environment variables for single threads
• setup: bump dcnum from 0.25.2 to 0.25.3

ChipStream 0.6.2

This release supports numpy 2 and comes with minor speed-ups inherited from dcnum 0.25.2.

• docs: fix typo in CLI help page
• setup: bump dcnum from 0.25.0 to 0.25.2 (minor speed-up)
• setup: support numpy 2