Docker-iSyntax2TIFF

ONLY FOR RESEARCH PURPOSES. It employes Philips SDK: © Koninklijke Philips N.V.2021.All rights are reserved.

This repository contains the Dockerfile and scripts necessary to build an environment for converting Philips' iSyntax files to TIFF format.

This image support both .isyntax and .i2syntax formats.

Results are always Pyramidal (multi-page) 8-bit sRGB (BIG) TIFF files (JPEG Compressed).

Requirements

• Philips' Pathology SDK 2.0_L1
• Docker

Philips' SDK can be downloaded also here (trough Guest Access, search SDK)

Installation

1. Download the Philips' Pathology SDK at OpenPathology Portal.
2. Extract the PythonTools.zip from the SampleCodes folder.
3. Extract the zip file belonging to Python libraries (look for py38 in the name) from the Ubuntu20.04 folder.
4. Clone this repository:

   git clone https://github.com/DBP008/Docker-iSyntax2TIFF.git
   

5. In the cloned repository's build folder, ensure you have the following files:
   • Dockerfile
   • convert_and_overview.sh
   • PythonTools.zip
   • philips-pathology-...py38....zip
6. Build the Docker environment:

   docker image build -t dp_isyntax2tiff .
   

Usage

• Place all .iSyntax files in a folder (e.g., isyntax_files).
• Run the following command:

  docker run --rm -v ./isyntax_files:/root/dp -it dp_isyntax2tiff
  

• After execution, you'll find the TIFF files, as well as macro and label JPEGs in the selected folder.