PYDGIN - PYthon Disease Generic INterface

A web-based project focused on the genetics and genomics of immunologically related human diseases.

D-I-L/master	D-I-L/develop

Running Tests

python runtests.py

Applications Used By PYDGIN

• django-criteria; used to manage creation and management of criteria index
• django-data-pipeline; used to populate ElasticSearch indices
• django-elastic; python interface for creating ElasticSearch queries
• django-pydgin-auth; authentication and authorisation app

Using Docker

Docker repositories are available to assist setting up:

• pydgin-docker; Pydgin, Nginx, Elasticsearch, Postgres containers
• rserve-docker; Rserve container
• jenkins-docker; Jenkins-CI, Elasticsearch, Postgres containers for data pipeline automation and testing

along with DockerHub repositories and images:

• tcarver/pydgin-docker
• tcarver/rserve-docker