v0.3.1 — Agent-Friendly

What's new

Most open-source repos are invisible to AI agents. README files are too long, contribution guides assume a human reader, and there's no machine-readable way to discover what a project does. This release fixes that for ClawBio.

• llms.txt — A concise, LLM-optimised project summary following the emerging llms.txt standard. Lists every doc, skill, and entry point in a format that fits an agent's context window.
• AGENTS.md — Universal guide for AI coding agents (Codex, Devin, Cursor, Claude Code, Copilot Workspace). Setup, commands, code style, project structure, safety boundaries, and full contribution workflow.
• Machine-readable skill catalog — skills/catalog.json auto-generated by scripts/generate_catalog.py. Indexes all 21 skills with name, version, status, dependencies, tags, and trigger keywords.
• Standardised SKILL.md files — All 21 skill specifications upgraded to a consistent YAML frontmatter schema with emoji, OS compatibility, install instructions, and structured methodology sections.
• Upgraded SKILL-TEMPLATE.md — Best-practice template matching the new standardised format so new contributors (human or AI) start right.
• Agent pointers in README + CONTRIBUTING — References to llms.txt, AGENTS.md, and catalog.json added so both human and AI contributors can find agent-specific documentation.

Why this matters

We're entering the era where AI agents don't just use tools — they contribute to codebases. If an agent can't discover your project, understand its architecture, and follow its conventions, it won't contribute. These six additions make ClawBio one of the first bioinformatics repos designed for agent collaboration from the ground up.

Files added / changed

File	Status
llms.txt	New
AGENTS.md	New
skills/catalog.json	New
scripts/generate_catalog.py	New
templates/SKILL-TEMPLATE.md	Updated
skills/*/SKILL.md (21 files)	Standardised
README.md	Updated
CONTRIBUTING.md	Updated
CHANGELOG.md	New

Full Changelog: v0.3.0...v0.3.1

v0.3.0 — Imperial College AI Agent Hack

Includes video of ClawBio introduction to Peter Steinberger at the UK AI Agent Hack, Imperial College London (1 March 2026).

v0.2.0 — Tests, CI, and ClawHub

What's new

• Test suites: 57 tests across PharmGx Reporter (24), Equity Scorer (24), NutriGx Advisor (9)
• GitHub Actions CI: runs on Python 3.10, 3.11, 3.12 for every push and PR
• ClawHub: 3 skills published (clawhub install pharmgx-reporter)
• Org migration: repo now at github.com/ClawBio/ClawBio
• Community: issue templates, PR template, Discussion seeded, 8 open skill issues

Demo

See the NutriGx Advisor demo video attached below.