STARNet (SpaTiAl RNA-ATAC-seq gene Regulatory Network) is a computational framework designed to decipher spatially specific gene regulatory networks (GRNs) from spatial RNA-ATAC-seq data.
Please refer to the official STARNet tutorials for detailed guides and documentation.
Currently, STARNet is not available for direct installation from PyPI (the Python Package Index). To use the package, you must clone the source code from its Git repository and install it locally.
Follow these steps in your terminal to get STARNet set up in your local environment.
1. Clone the Repository
First, use git to clone the STARNet repository to your local machine.
git clone https://github.com/DBinary/STARNet.git2. Navigate to the Directory
Once the repository is cloned, change your current directory to the newly created STARNet folder.
cd STARNet3. Install the Package
Now, you can install the package using pip.
pip install -e .After the installation is complete, you can import and use STARNet in your Python scripts or interactive sessions like this:
import STARNet as ST