Vole genome analysis

Description

This repository contains material for the analysis of Microtus whole genomes.

Content

Files for data preprocessing:

• 00_compute_popgen_stats.R

• 00_compute_RNDsp.R

• 00_utils.R

• 00_VCF_preprocessing.sh

Files for data analysis and visualisation:

• 01_make_pop_history_plots.R

• 02_make_RNDsp_plots.R

• 03_make_GO_Enrichment_plots.R

• 04_make_outlier_overlap_plot.R

• 05_make_zooms_div_plot.R

Supplementary information:

• 99_supp_correlations-dxy-pi.R