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5 changes: 5 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,7 @@ The [Anterior Commissure - Posterior Commissure (ACPC) line](https://radiopaedia

![Screenshot of the MNI ICBM 2009c Nonlinear Symmetric T1 template highlighting the ACPC line](img/mni_icbm152_t1_tal_nlin_asym_09c_acpc.png "Screenshot of the MNI ICBM 2009c Nonlinear Symmetric T1 template highlighting the ACPC line")
![Screenshot of the CT template from the Clinical toolbox for SPM 8/2014 highlighting the ACPC line](img/scct_unsmooth_acpc.png "Screenshot of the CT template from the Clinical toolbox for SPM 8/2014 highlighting the ACPC line")
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The ACPC line is similar to the orbitomeatal line used as a common reference plane in CT, which is about 9° steeper than the ACPC line. Aligning both CT and MR scans to the ACPC line should yield image volumes, which are easily comparable longitudinally and between modalities.

Expand Down Expand Up @@ -99,3 +100,7 @@ Please see https://github.com/BrainImAccs/BrainSTEM#debugging
Please see [templates/README.md](https://github.com/brainimaccs/fatbACPC/blob/master/templates/README.md) for information on the templates.

The main scripts are based on the [BASH3 Boilerplate](http://bash3boilerplate.sh).


## License
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