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@opalinn opalinn commented Jan 14, 2026

  1. Add a new parameter --single or --paired (depending on the data type) to the command used to run the pipeline

  2. Add support of single-end RNA-seq data to fastp step (process FastpSingle)

  3. Add fixture and minimal integration test for single-end RNA-seq data

  4. Update documentation (Usage section)

@opalinn opalinn linked an issue Jan 14, 2026 that may be closed by this pull request
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Add support of single-end reads (rnaseq mode only)

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