Fixed setup.py

Added link_ssv.py

Fusion-bloom refactored

Separate bash and make files of Fusion-Bloom for Bioconda recipe

Prep for Bioconda

Minor fixes for Bionconda

Conda install

Software dependencies for TAP, TAP2 and Fusion-Bloom can now be handled through Conda installation

Python3

Python3 support and general maintenance

Fusion-Bloom

Uses RNA-Bloom v1.2 and replaces BWA-MEM with Minimap2 for r2c alignment

TAP2

TAP2 uses RNA-Bloom for assembly and associates novel splicing events with genomic SNVs when provided with WGS alignment file

PAVFinder v.1.0.0

• fusion-bloom release (uses RNA-Bloom for assembly)
• TAP compatibility with BBT 2.1.1

pavfinder v0.4.2

v0.4.2