mtGrasp v1.1.9

• Release v1.1.9
• Added parameters --min_contig_len and --max_contig_len to control length filtering before BLAST filtering step (Thanks @jacobimbery!)
  • Was previously hardcoded as 1000 and 20000, respectively - defaults are set to these values to ensure consistent runs with previous versions

mtGrasp v1.1.8

• Release v1.1.8
• Create the BLAST database in a directory relative to the working directory, not the directory where the scripts are installed
  • The install directory may be read-only
• Documentation updates

mtGrasp v1.1.7

• Release v1.1.7
• Fix for using multi-character strings for snakemake config parameters in sub_then_run_mtgrasp.sh

mtGrasp v1.1.6

• Release v1.1.6
• Use multi-character strings for snakemake config parameters
  • Avoids compatibility issue with snakemake v8.17.0+
  • No changes to usage of mtgrasp.py driver script

mtGrasp v1.1.5

• Release v1.1.5
• Fix bug that caused error when ambiguous bases were encountered during reverse complementation in mtgrasp_end_recover.py
• Fix to use multiple k-mer sizes for Sealer in end recovery
• Refactoring mtgrasp_end_recover.py

mtGrasp v1.1.4

• Release v1.1.4
• Renamed driver files
• Documentation updates
• Bugfix for summarization script, error message when no mitochondrial sequences found

mtGrasp v1.1.3

• Release v1.1.3
• Refactored mtgrasp.py
• Updated documentation
• Renamed scripts to have mtgrasp prepended

mtGrasp v1.1.2

• Implemented a checkpoint to verify whether 'runmitos.py' exists in the user's PATH. If it's already included, there's no longer a need to specify "-mp".

• Updated README for non-conda users

mtGrasp v1.1.1

This release includes a fix ensuring find_conda_env() is only called when user is running mitos via conda.

mtGrasp v1.1.0

• Introduced the "-mp" option to enable non-conda users to specify the path to MITOS's main script "runmitos.py".
• Implemented a test case ("-test"), this allows users to test run mtGrasp and ensure all required dependencies are installed.