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Fix duplicated row in metadata form and clean some MEPRAM initial config#879

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albatalavera merged 5 commits intoBU-ISCIII:developfrom
albatalavera:develop
Mar 25, 2026
Merged

Fix duplicated row in metadata form and clean some MEPRAM initial config#879
albatalavera merged 5 commits intoBU-ISCIII:developfrom
albatalavera:develop

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@albatalavera albatalavera commented Mar 24, 2026

Summary

This PR cleans up the MEPRAM initial configuration and fixes Excel template generation issues.

What changed

  • Removed upload_to_gisaid from initial_config-MEPRAM.yaml as MEPRAM no longer expects GISAID upload configuration in the initial config
  • Added read_lab_metadata_heading_default-MEPRAM.json with the default MEPRAM lab metadata headings
  • Fixed DATA_VALIDATION formatting issues:
    • corrected header row count
    • removed duplicated first row

PR Checklist

  • This comment contains a description of changes (with reason).
  • Make sure your code lints (black and flake8).
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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@Shettland Shettland left a comment

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LGTM

@albatalavera albatalavera merged commit 8c00879 into BU-ISCIII:develop Mar 25, 2026
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2 participants