The current lablog to generate the assembly results states:
# Links to reports
ln -s ../../../ANALYSIS/*ASSEMBLY/99-stats/multiqc/multiqc_report.html .
ln -s ../../../ANALYSIS/*ASSEMBLY/99-stats/summary_assembly_metrics_mqc.csv .
ln -s ../../../ANALYSIS/*ASSEMBLY/99-stats/kmerfinder_summary.csv .
But bacass 2.5.0 (Currently default by the tools) generates the multiqc report and assembly metrics under multiqc and the kmerfinder summary under Kmerfinder. So it will end up looking like:
# Links to reports
ln -s ../../../ANALYSIS/*ASSEMBLY/multiqc/multiqc_report.html .
ln -s ../../../ANALYSIS/*ASSEMBLY/multiqc/summary_assembly_metrics_mqc.csv .
ln -s ../../../ANALYSIS/*ASSEMBLY/Kmerfinder/kmerfinder_summary.csv .
The current lablog to generate the assembly results states:
But bacass 2.5.0 (Currently default by the tools) generates the multiqc report and assembly metrics under
multiqcand the kmerfinder summary underKmerfinder. So it will end up looking like: