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Parallelize/increase efficiency of IRMA's 99-stats step

enhancementNew feature or requestNew feature or request

Status: Open.

#630 In BU-ISCIII/buisciii-tools;

· ESapenaVentura opened on Feb 11, 2026

Update nextclade checks in viralrecon's and IRMA's lablogs

Status: Open.

#628 In BU-ISCIII/buisciii-tools;

· victor5lm opened on Feb 10, 2026

Transform absolute pathways to relative pathways in lablog files from the templates

Status: Open.

#590 In BU-ISCIII/buisciii-tools;

· victor5lm opened on Oct 10, 2025

Change the way lablog viralrecon checks about already downloaded references in refgenie

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#497 In BU-ISCIII/buisciii-tools;

· jaimeozaez opened on Apr 24, 2025

Create a new buisciii-tools module to check new versions of software

Status: Open.

#427 In BU-ISCIII/buisciii-tools;

· victor5lm opened on Feb 6, 2025

Memory issue when running taxprofiler with Kaiju

Status: Open.

#408 In BU-ISCIII/buisciii-tools;

· albatalavera opened on Jan 20, 2025

Wrong SFTP credentials in delivery email

Status: Open.

#353 In BU-ISCIII/buisciii-tools;

· svarona opened on Oct 23, 2024

viralrecon template remove sorted.bams only for amplicons, not for metagenomic

Status: Open.

#311 In BU-ISCIII/buisciii-tools;

· svarona opened on Aug 12, 2024

Bioinfo-doc does not apply indentations in the email notes

enhancementNew feature or requestNew feature or request

Status: Open.

#308 In BU-ISCIII/buisciii-tools;

· victor5lm opened on Aug 8, 2024

Better handling of scratch module execution

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

#206 In BU-ISCIII/buisciii-tools;

· Shettland opened on Mar 1, 2024

Separate templates folder into another repo

enhancementNew feature or requestNew feature or request

Status: Open.

#184 In BU-ISCIII/buisciii-tools;

· svarona opened on Jan 16, 2024

Add Recentrifuge to seek_and_destroy pipeline

Status: Open.

#163 In BU-ISCIII/buisciii-tools;

· saramonzon opened on Oct 2, 2023