v1.1

Improve BAM filtering

v1.0

Fully function pipeline tested on human and mouse.

New features

• Additional genome options including mouse, human, and any other species in ENSEMBL
• Reduced RAM usage during STAR indexing and alignment prevents common failures

beta v1.0

Pipeline

• FastQC
• AdapterRemoval
• STAR
• samtools view filtering
• samtools flagstat
• picard
• SUBREAD featureCounts

alpha v0.1

Add vignette results