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Update pipeline to cutadapt#19

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kdillmcfarland wants to merge 10 commits intomainfrom
dev_kadm
Open

Update pipeline to cutadapt#19
kdillmcfarland wants to merge 10 commits intomainfrom
dev_kadm

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@kdillmcfarland
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Describe the purpose of these changes
There is no adapterremoval software for Windows. Moreover, we've had inconsistent install problems on Mac with this library. Thus, we change adapter trimming to cutadapt

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