A toolset for high throughput sequence analysis using a streaming approach facilitated by Linux pipes.
Please see the web page for install and usage instructions: https://s4hts.github.io/HTStream/
And this page for a Docker image: https://hub.docker.com/r/dzs74/htstream.
If you encounter any bugs or have suggestions for improvement, please post them to: https://github.com/s4hts/HTStream/issues
MultiQC support is in development. Check out https://github.com/bnjenner/MultiQC for progress on HTML reports from HTStream log files!
Thanks for trying HTStream!