Mixed iNEXT
The spider abundance data used in the code as an example were taken from Thorn et al. (2017); The bird incidnce data were taken from Thorn et al. (2016).
miNEXT includes ten files: (1) bird.txt: incidence data. (2) Spider: abundnce data. (3) Abundance.R: main code for abundance data to compute and plot mixture of two rarefaction/extrapolation curves, and the numbers of shared and unique species in any mixed sample of two rarefaction curves. An abundance example is also included. (4) Incidence.R: main code for incidence data to compute and plot mixture of two rarefaction/extrapolation curves, and the numbers of shared and unique species in any mixed sample of two rarefaction curves. An incidence example is also included. (5) plot_function.R: functions used to plot the outcome of Abundance.R/Incidence.R (6) function_abun.cpp: all cpp functions used in Abundacne.R. (7) function_inci.cpp: all cpp functions used in Incidence.R. (8) Abundance_subfunction.R: all subfunctions used in Abundacne.R. (9) JADE.R: functions used in the extrapolation part of abundance and incidence data. (10) bootstrap_p.R: functions used to compute confidence interval.
More details will be given when Chao et al. (2019) is accepted for publication