A bioinformatics project related to Alu and L1 transposons stem-loop structures recognition.
This repository contains toolkit for our study. The article is available at https://www.nature.com/articles/s41598-019-43403-3
Source code (Python and Bash scripts) of sequences pre-processing.
IPython notebooks with models evaluation and results visualization.
Full datasets are not present in GitHub repo. You can request them by sending us an email.