Releases: AlexChristensen/SemNeT
SemNeT 1.4.0
Changes in version 1.4.0
o UPDATE: output names for randwalk
o UPDATE: Shiny interface is condensed and more step-by-step progressive
o UPDATE: Shiny includes random walk analysis
o UPDATE: Shiny includes spreading activation analysis (thanks to Cythina Siew)
o ADD: animation plot for spreading activation analysis in Shiny
o FIX: randwalk bug with 'steps' and 'reps' argument
o FIX: Shiny 'Clear Results' for new analyses
o UPDATE: progress bar for some Shiny analyses
o FIX: output for animation plots in Shiny
o UPDATE: S3method for animation plots
o UPDATE: citations added to Shiny analyses
o ADD: permutation test to SemNeT (`permSemNeT) and Shiny
o UPDATE: ANOVAs controlling for the number of nodes and edges is now the statistical test in test.bootSemNeT
o ADD: functions to convert data into other softwares format: SNAFU (convert2snafu) and igraph (convert2igraph)
SemNeT 1.3.0
Changes in version 1.3.0
UPDATE: added integration of SemNetCleaner output into SemNeTShiny
MOVE: equate and finalize moved from SemNetCleaner to SemNeT
REMOVE: foreach and doParallel dependencies were removed (all parallelization is through the pbapply package)
REMOVE: SemNetCleaner dependency was removed to allow SemNeT to operate independently -- all necessary functions from SemNetCleaner have been moved to internal functions
UPDATE: compare.nets has changed to compare_nets
ADD: Several semantic network estimation methods (see CN, NRW, and PF) -- these are included in the Shiny app
CHANGE: partboot is now bootSemNeT
CHANGE: plot.partboot is now plot.bootSemNeT
CHANGE: partboot.test is now test.bootSemNeT
UPDATE: cosine was added to internal functions to remove archived package from dependencies
Changes in version 1.2.0
o ADD: Shiny app
o FIX: 'groups' argument in org.plot
o UPDATE: moved several functions to internal to clean up package
o ADD: binary responses matrices from animals verbal fluency data associated with the 'SemNetCleaner' package (open.animals)
Changes in version 1.1.3
o added extended ANOVA capabilities to partboot.test (e.g., two-way ANOVA)
SemNeT 1.1.2
Changes in version 1.1.2
o fixed bug for weighted modularity in semnetmeas
o updated citation (PsyArXiv)
o changed y-axis in plots for partboot to read as integers (as added black dot for mean in the scatterplots under the raincloud)
o added vignette for analyzing semantic networks
o added data for plots in vignette
Changes in version 1.1.1
o updated citation
Changes in version 1.1.0
o changed semnetmeas to allow calculation of any combination of measures
o partboot, partboot.test, plot.partboot, randnet.test, and compare.nets now handle groups greater than 2
o bug fixes
SemNeT 1.0.0
Changes in version 1.0.0
o serious, and I mean serious, revamp of functions (all for the better)
o moved most functions over to 'SemNetCleaner' and now only consists of methods and measures for semantic network analysis
o added a 'sim.fluency' function for toy examples in CRAN checks
o added two datasets 'one.result' and 'two.result' for toy examples in CRAN checks
o 'partboot.plot' changed to 'plot.partboot' and added to S3 methods
o 'parboot.test' now outputs a list for each network measure
Changes in version 0.9.9
o animals.database: a database for animals was added
o animals.misnomer: common misnomers for animals was added
o textcleaner: added database functionality, which makes the cleaning process more accurate, efficient, and reproducible
o several wrapper functions added to aid textcleaning from a database
Changes in version 0.1.2
o autoConverge: significantly improved interface
o separated all function files into individual files
o semnetcleaner (changed to textcleaner): added argument to input participants by row or column; ids now included for output; added output to show what spellcheck changed
o destr: improved functionality to allow selection of separating character
o randwalk: added a function to simulate random walks on the network to examine spontaenous spreading activation
o bin2resp: a function to change cleaned binary response data back into character data for each participant
Changes in version 0.1.1
o cosine: added cosine similarity
o semnetboot: changed name to partboot and added the cosine similarity
o semnetmeas: moved from NetworkToolbox
o plot.partboot: a function that generates "raindrop" plots for bootstrapped data
o org.plot: an organization function for plot.partboot (not for individual use)
o convert2cytoscape: added a function to convert a network matrix into a sparse matrix for Cytoscape visualization
o added new examples with corresponding data files
Changes in version 0.1.0
o autoConverge: created an automated converge function to eliminate the manual converge process
o autoDeStr: created an automated de-string function to eliminate most manual de-stringing
o fine-tuned most functions
o semnetboot: moved from package NetworkToolbox
SemNetCleaner 0.1.2
See updates in NEWS file
SemNetCleaner 0.1.0
Update README.md
SemNetCleaner
First release
*semnetcleaner function: outputs a binarized response matrix (rows = participants, columns = responses) that's been cleaned (spell-checked and de-pluralized)
*converge function: merges one column of responses with another in a cleaned response matrix
*finalize function: removes columns with responses fewer than 2
*equate function: outputs a list of response matrices that keeps only the same responses that appear in both groups