Releases: AlexChristensen/NetworkToolbox
NetworkToolbox 1.4.0
Changes in version 1.4.0
o NEW FUNCTION: dCor.parallel parallelizes the dCor function to improve processing speed
o NEW FUNCTION: dCor computes the distance correlation for time series data (intended for use with cpm)
o BUG FIX: named communities into comcat and stable
o BUG FIX: where comcat and stable treats NA community membership as actual membership -- corrects EGAnet::net.loads outputs
o BUG FIX: comcat and stable for EGAnet
NetworkToolbox 1.3.4
Changes in version 1.3.4
o fixed bug where comcat and stable treats NA community membership as actual membership -- corrects EGAnet::net.loads outputs
o bug fixed in comcat and stable for EGAnet
Changes in version 1.3.3
o node.redundant function migrated to the EGAnet pacakge
o added the function network.permutation to compute permutation tests for network measures
o changed name of net.coverage to network.coverage
NetworkToolbox 1.3.2
Changes in version 1.3.2
o updated Description file
o updated citation
NetworkToolbox 1.3.1
Changes in version 1.3.1
o 'TMFG' bug fix
Changes in version 1.3.0
o converged all Connectome Predictive Modeling into one documentation see '?cpm'
o migrated 'net.scores' and 'net.loads' to 'EGAnet' package
o added several new functions to implement the latest state-of-the-art Information Filtering Network method: Maximally Filtered Clique Forest (MFCF; thanks Guido!)
o added Guido Previde Massara as a contributor
o changed name of function 'strength.dim' to 'lnet.loads' and updated documentation
o added information about 'NetworkToolbox' on package load
o changed name of function 'nams' to 'lnet.score', optimized function to be more efficient with large datasets, and updated documentation
o added function 'item.overlap' to detect redundant nodes in a network
o added function 'strength.dim' to identify within and between dimension node strength
o added 'absolute' argument for 'strength' and 'stable' functions (extension for EGA package)
o additional updates to documentation
o bug fix for one dimension in comcat function
o made 'rspbc' output a vector
NetworkToolbox 1.2.3
Changes in version 1.2.3
o removed isSym function
o fixed bugs in degree, strength, hybrid, and edgerep functions (symmetric matrix check is fixed)
o naming order bug fix in comcat
o removed bootgen and bootgen.plot functions (experimental funcitons that may return later)
o updated several functions' documentation
Changes in version 1.2.2
o comcat: added functionality to compute connectivity across communities or for each community
o stable: added closeness centrality
o desc: descriptive statistics function for a single variable
o desc.all: descriptive statistics function for a dataset
Changes in version 1.2.1
o updated comm.close algorithm: takes the reciprocal of the mean ASPL of each community
o LoGo: removed some arguments, added "..." for deprecated arguments (e.g., standardize)
o rep.resp: function to detect repetitive responding
NetworkToolbox 1.2.0
o net.coverage: a function to examine the coverage of a subset of nodes in the network
o comm.cent: a function to estimate the centrality of communities in the network
o comm.eigen: a function to estimate the eigenvector centrality of communities in the network (based on the flow.frac function)
o flow.frac: a function to estimate the eigenvector centrality of communities in the network
o core.items: a function to automatically determine core, intermediate, and peripheral items in the network
o commboot: removed
o removed splitsamp functions (will be brought back in a future update)
o removed options for weighted argument in network construction functions
o bootgenPlot changed to bootgen.plot
o significantly improved documentation and descriptions of all functions
o improved functionality of several functions
o updated citation
NetworkToolbox 1.1.3
See updates in NEWS file
NetworkToolbox 1.1.2
See updates in NEWS file
NetworkToolbox 1.1.1
See updates in NEWS
NetworkToolbox 1.1.0
Updates
*new data files: NEO-PI-3 data for psychometric network analysis, verbal fluency files for semantic network analysis, behavioral NEO-PI-3 and an associated brain connectivity array for brain network analysis
*bootgen function: no longer produces plots and a seeds argument can now be used to replicate the previous analysis using the Seeds output
*bootgenPlot function: output from the bootgen function can now be input into a separate function to obtain plots. Contains an argument to also plot the bootstrapped network generalization method
*PMFG function: now outputs a list to be used in Cytoscape visualization software (sparseList)
*reg function: a function to perform regression for a dataset. An argument can set the type of regression and for the matrix to be symmetric
*nams function: a function to calculate network adjusted mean or sum for data (based on the hybrid centrality)
*hybrid function: added an option for "standard", "random", or "average" betweenness centrality to be used