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@AMRmicrobiology

AMRmicrobiology

README.md

Welcome to the github space of the @AMRmicrobiology group from ISGlobal 👋

🙋‍♀️ ISGlobal's mission is to improve global health and promote health equity through excellence in research and the translation and application of knowledge. Our research group focuses on the molecular bases of microbial resistance on multiple clinical multiresistant bacteria.

👩‍💻 Below you can find a compilation of curated pipelines built using Nextflow aimed to ease the research on antimicrobial resistant genes (ARGs) in clinical strains.

🌈 🍿 🧙

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  1. WGS-Analysis-VariantCalling WGS-Analysis-VariantCalling Public

    Nextflow pipeline for whole-genome sequencing (WGS) analysis and variant calling in bacterial genomes using Illumina data, supporting de novo assembly and reference-based analysis.

    Nextflow 5 2

  2. ONT_BACTERIAL_ANALYSIS ONT_BACTERIAL_ANALYSIS Public

    A scalable Nextflow pipeline for automated WGS analysis, optimized for Oxford Nanopore and hybrid ONT–Illumina assemblies in clinical microbiology research.

    Nextflow 2 1

  3. .github .github Public

    Files for @AMRmicrobiology GitHub organisation

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