[WIP] Document dependencies for tools and their requirements

[Copilot]

Thanks for assigning this issue to me. I'm starting to work on it and will keep this PR's description up to date as I form a plan and make progress.

Original prompt

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This section details on the original issue you should resolve

<issue_title>Document dependencies</issue_title>
<issue_description>Document the dependancies we need for the tools and their dependencies (e.g., kernelDB or others). Please inspect all code, clone dependencies and document the per tool dependencies in markdown.</issue_description>

Comments on the Issue (you are @copilot in this section)

• Fixes Document dependencies #166

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