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Added parameter groups to configuration as well as a new class, `ParameterCollection`, to manage parameters/groups and their realization. Changes included: - Added `groups` attribute to the `ConfigurationModel` class along with validation to check the referenced parameters are defined in the `parameters` attribute. - Added the `ParameterCollection` class which takes parameter/group configuration and group names and manages the collection of required parameters including providing a `realize` method for sampling all at once. - Added the `--group` option to `flepimop2 simulate` and made use of the `ParameterCollection` class in the `SimulateCommand` to make groups available for simulating. Closes #47.
TimothyWillard
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Added parameter groups to configuration as well as a new class,
ParameterCollection, to manage parameters/groups and theirrealization. Changes included:
groupsattribute to theConfigurationModelclass along withvalidation to check the referenced parameters are defined in the
parametersattribute.ParameterCollectionclass which takes parameter/groupconfiguration and group names and manages the collection of required
parameters including providing a
realizemethod for sampling all atonce.
--groupoption toflepimop2 simulateand made use of theParameterCollectionclass in theSimulateCommandto make groupsavailable for simulating.
Closes #47.