.env.example

# Core ports
FRONTEND_PORT=5173
API_PORT=4000
R_ENGINE_PORT=8000
POSTGRES_PORT=5432
REDIS_PORT=6379
MINIO_API_PORT=9000
MINIO_CONSOLE_PORT=9001
JOB_QUEUE_MODE=bullmq
JOB_STORE_MODE=postgres

# r-engine build profile
# 0: install core R stack only (plumber + limma), faster/more stable
# 1: also install enrichment packages (clusterProfiler + org.Hs.eg.db), slower/heavier
R_ENGINE_INSTALL_ENRICHMENT_PACKAGES=0
R_ENGINE_CRAN_REPO=https://cloud.r-project.org

# compose up retry profile
# errors matching this regex are treated as non-retryable in scripts/compose-up-retry.sh
COMPOSE_UP_NON_RETRYABLE_REGEX=yaml|no such file or directory|cannot locate specified dockerfile|unsupported config option|additional property|is not allowed|unknown service|invalid reference format|failed to read dockerfile

# compose log artifact trim profile (used by scripts/collect-compose-logs.sh)
COMPOSE_LOG_MAX_FILE_BYTES=5242880
COMPOSE_LOG_TAIL_BYTES=262144
COMPOSE_LOG_MAX_SERVICES_BYTES=5242880
COMPOSE_LOG_MAX_EVENTS_BYTES=10485760
COMPOSE_LOG_TAIL_SERVICES_BYTES=262144
COMPOSE_LOG_TAIL_EVENTS_BYTES=524288

# Postgres
POSTGRES_DB=appdb
POSTGRES_USER=postgres
POSTGRES_PASSWORD=postgres

# MinIO
MINIO_ROOT_USER=minioadmin
MINIO_ROOT_PASSWORD=minioadmin123

# Upload blob storage backend
# fs: local file storage (default)
# s3/minio: S3-compatible object storage
UPLOAD_BLOB_BACKEND=s3
UPLOAD_BLOB_DIR=./services/api/reports
UPLOAD_BLOB_BUCKET=cloud-fullstack-docker-artifacts
UPLOAD_BLOB_PREFIX=uploads
UPLOAD_BLOB_ENDPOINT=http://minio:9000
UPLOAD_BLOB_REGION=us-east-1
UPLOAD_BLOB_ACCESS_KEY_ID=minioadmin
UPLOAD_BLOB_SECRET_ACCESS_KEY=minioadmin123
UPLOAD_BLOB_FORCE_PATH_STYLE=true
UPLOAD_BLOB_POLICY=private