diff --git a/src/diffusers/models/attention_dispatch.py b/src/diffusers/models/attention_dispatch.py
index 289c3e82955b..ee43b687ec6a 100644
--- a/src/diffusers/models/attention_dispatch.py
+++ b/src/diffusers/models/attention_dispatch.py
@@ -126,7 +126,7 @@
 
 
 if _CAN_USE_NPU_ATTN:
-    from torch_npu import npu_fusion_attention
+    from torch_npu import npu_fusion_attention, _npu_flash_attention_unpad
 else:
     npu_fusion_attention = None
 
@@ -1582,7 +1582,7 @@ def score_mod(score, batch_idx, head_idx, q_idx, kv_idx):
         enable_gqa=enable_gqa,
         return_lse=return_lse,
     )
-    out = out.permute(0, 2, 1, 3)
+    out = out.permute(0, 2, 1, 3).contiguous()
     return out
 
 
@@ -1602,23 +1602,17 @@ def _native_attention(
     return_lse: bool = False,
     _parallel_config: Optional["ParallelConfig"] = None,
 ) -> torch.Tensor:
-    if return_lse:
-        raise ValueError("Native attention backend does not support setting `return_lse=True`.")
-    query, key, value = (x.permute(0, 2, 1, 3) for x in (query, key, value))
-    out = torch.nn.functional.scaled_dot_product_attention(
-        query=query,
-        key=key,
-        value=value,
-        attn_mask=attn_mask,
-        dropout_p=dropout_p,
-        is_causal=is_causal,
-        scale=scale,
-        enable_gqa=enable_gqa,
-    )
-    out = out.permute(0, 2, 1, 3)
+    B, S, N, D = query.shape
+    query = query.view(B * S, N * D)
+    key = key.view(B * S, N * D)
+    value = value.view(B * S, N * D)
+    seq_len = torch.full((B,), S, dtype=torch.int32, device='cpu')
+    out = query
+    _npu_flash_attention_unpad(query, key, value, seq_len, 1/math.sqrt(D), N, N, out)
+
+    out = out.view(B, S, N, D).contiguous()
     return out
 
-
 @_AttentionBackendRegistry.register(
     AttentionBackendName._NATIVE_CUDNN,
     constraints=[_check_device, _check_qkv_dtype_bf16_or_fp16, _check_shape],
diff --git a/src/diffusers/models/transformers/transformer_flux.py b/src/diffusers/models/transformers/transformer_flux.py
index 16662e8d8fe8..aa9a36409171 100644
--- a/src/diffusers/models/transformers/transformer_flux.py
+++ b/src/diffusers/models/transformers/transformer_flux.py
@@ -18,6 +18,7 @@
 
 import numpy as np
 import torch
+import torch_npu
 import torch.nn as nn
 import torch.nn.functional as F
 
@@ -130,7 +131,6 @@ def __call__(
     ) -> torch.Tensor:
         if hasattr(self._parallel_config, "context_parallel_config") and \
             self._parallel_config.context_parallel_config is not None:
-
             return self._context_parallel_forward(
                 attn, hidden_states, encoder_hidden_states, attention_mask, image_rotary_emb, pre_query, pre_key, cal_q
             )
@@ -242,32 +242,25 @@ def _context_parallel_forward(
         if image_rotary_emb is not None:
             key = apply_rotary_emb(key, image_rotary_emb, sequence_dim=1)
         key_all = ulysses_preforward(key, group, world_size, B, S_KV_LOCAL, H, D, H_LOCAL)
-        
+
         value_all = _wait_tensor(value_all)
-        value_all = value_all.reshape(world_size, S_KV_LOCAL, B, H_LOCAL, D).flatten(0, 1).permute(1, 0, 2, 3).transpose(2,1).contiguous()
+        value_all = value_all.reshape(world_size, S_KV_LOCAL, B, H_LOCAL, D).flatten(0, 1).permute(1, 0, 2, 3).contiguous()
+        B, S, N, D = value_all.shape
+        value_all = value_all.view(B * S, N * D)
 
         query_all = _wait_tensor(query_all)
-        query_all = query_all.reshape(world_size, S_Q_LOCAL, B, H_LOCAL, D).flatten(0, 1).permute(1, 0, 2, 3).transpose(2,1).contiguous()
-
+        query_all = query_all.reshape(world_size, S_Q_LOCAL, B, H_LOCAL, D).flatten(0, 1).permute(1, 0, 2, 3).contiguous()
+        query_all = query_all.view(B * S, N * D)
 
         key_all = _wait_tensor(key_all)
-        key_all = key_all.reshape(world_size, S_KV_LOCAL, B, H_LOCAL, D).flatten(0, 1).permute(1, 0, 2, 3).transpose(2,1).contiguous()
-
-        out = npu_fusion_attention(
-            query_all,
-            key_all,
-            value_all,
-            H_LOCAL,  # num_heads
-            input_layout="BNSD",
-            pse=None,
-            scale=1.0 / math.sqrt(D),
-            pre_tockens=65536,
-            next_tockens=65536,
-            keep_prob=1.0,
-            sync=False,
-            inner_precise=0,
-        )[0]
-        out = out.transpose(1, 2).contiguous()
+        key_all = key_all.reshape(world_size, S_KV_LOCAL, B, H_LOCAL, D).flatten(0, 1).permute(1, 0, 2, 3).contiguous()
+        key_all = key_all.view(B * S, N * D)
+        
+        seq_len = torch.full((B,), S, dtype=torch.int32, device='cpu')
+        out = query_all
+        torch_npu._npu_flash_attention_unpad(query_all, key_all, value_all, seq_len, 1/math.sqrt(D), N, N, out)
+
+        out = out.view(B, S, N, D).contiguous()
         out = out.reshape(B, world_size, S_Q_LOCAL, H_LOCAL, D).permute(1, 3, 0, 2, 4).contiguous()
         out = _all_to_all_single(out, group)
         hidden_states = out.flatten(0, 1).permute(1, 2, 0, 3).contiguous()