Custom events provide for misowrap

[obenno]

Hi Yarden,

Thanks for this wonderful tool as well as MISO.
I'm trying to run MISO on multiple samples, I read through the documentation of rnaseqlib, there is some part missing for explanation on configuration format of misowrap. I read some code of setting part, it seems a init_dir is compulsory, I'm working on a non-model crop, may I ask is there a way to provide custom alternative splicing events to misowrap with the "initialization" step of rnaseqlib?
Another thing is how does misowrap deal with biological replicates? Would a pooled step be included after identification in each sample separately? Appreciated if you could provide some more detail.

Bests,
oben