From b487127dd78fdadb905258d5c6a88e52aec19960 Mon Sep 17 00:00:00 2001 From: Jim Robinson Date: Tue, 1 Oct 2019 23:05:48 -0700 Subject: [PATCH] Update sashimi.rst Hi, just noticed we never updated the IGV instructions, Sashimi has been part of the release for some time. --- docs/source/sashimi.rst | 10 +--------- 1 file changed, 1 insertion(+), 9 deletions(-) diff --git a/docs/source/sashimi.rst b/docs/source/sashimi.rst index 8f2bec9..a7cda19 100644 --- a/docs/source/sashimi.rst +++ b/docs/source/sashimi.rst @@ -287,15 +287,7 @@ Command-line options Making Sashimi plots from IGV ============================= -To create Sashimi plot within IGV, download the snapshot release of IGV: - -`IGV Browser snapshot (http://www.broadinstitute.org/igv/projects/downloads/snapshot/IGV_snapshot.zip) `_ - -Run IGV with the Sashimi plot feature enabled: :: - - java -jar -Xmx2g -DenableSashimi="true" igv.jar - -Load the RNA-Seq samples as BAM tracks. Navigate to the region of interest, right click the tracks window and select "Sashimi plot" from the menu. A customizable Sashimi plot will appear in a new window, which can be saved in PNG or SVG formats. +To create Sashimi plot within IGV [https://software.broadinstitute.org/software/igv/download](http://software.broadinstitute.org/software/igv/download) first load the RNA-Seq samples as BAM tracks. Navigate to the region of interest, right click the tracks window and select "Sashimi plot" from the menu. A customizable Sashimi plot will appear in a new window, which can be saved in PNG or SVG formats. Visualizing and plotting MISO output