RuntimeWarning: Long {deleted, inserted} alignment

[jma1991]

The nf-core/rnasplice pipeline is failing on the MISO module when run on a large test data. The error reported is:

Command error:
/usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long deleted alignment at pysplicing/src/solve.c:281
pysplicing.MISO_ALGO_REASSIGN)
/usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long inserted alignment at pysplicing/src/solve.c:291
pysplicing.MISO_ALGO_REASSIGN)
/usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long inserted alignment at pysplicing/src/solve.c:291
pysplicing.MISO_ALGO_REASSIGN)
/usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long deleted alignment at pysplicing/src/solve.c:281
pysplicing.MISO_ALGO_REASSIGN)
/usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long deleted alignment at pysplicing/src/solve.c:281
pysplicing.MISO_ALGO_REASSIGN)
/usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long inserted alignment at pysplicing/src/solve.c:291
pysplicing.MISO_ALGO_REASSIGN)
/usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long deleted alignment at pysplicing/src/solve.c:281
pysplicing.MISO_ALGO_REASSIGN)
/usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long inserted alignment at pysplicing/src/solve.c:291
pysplicing.MISO_ALGO_REASSIGN)

I saw a similar issue #132 but the link in the response is no longer working.