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I noticed that most of the output files have no header. Can you give a format comment? I got this:
SM Contig12261.0 517 Contig12261.0 AUGUSTUS exon 434 1837 0.98 + . transcript_id "g12501"; distance:83 Contig12261.0 1289 Contig12261.0 AUGUSTUS exon 434 1837 0.98 + . transcript_id "g12501"; distance:855
SM OXYTRI_MIC_93187 11205 OXYTRI_MIC_93187 11327
SM OXYTRI_MIC_89755 42639 OXYTRI_MIC_89755 43203
SM OXYTRI_MIC_89755 43122 OXYTRI_MIC_89755 43208
SM Contig12261.0v1 1246 Contig12261.0v1 AUGUSTUS exon 425 1828 1 + . transcript_id "g18530"; distance:821 Contig12261.0v1 1312 Contig12261.0v1 AUGUSTUS exon 425 1828 1 + . transcript_id "g18530"; distance:887
I don't know how to interpret this result, or what process to follow to continue.
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