In the last step for junction annotation,
python src/statistic_annotation.py refs/gencode.v19.annotation_noHead.gtf junctionSite.txt loci1_annotation5bp+gtf.txt loci2_annotation5bp+gtf.txt
what is the "gencode.v19.annotation_noHead.gtf" file?
where can we find this gtf file or is it edited?
Any help is highly appreciated!
Thanks,
@Tanv1