busco/Dockerfile at master · wkusmirek/busco · GitHub

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FROM ubuntu:trusty
MAINTAINER kusmirekwiktor@gmail.com

ENV AUGUSTUS_CONFIG_PATH /opt/augustus-3.2.2/config

RUN apt-get update && \
 apt-get upgrade -y && \
 apt-get install -y wget zlib1g-dev libboost-iostreams-dev libsqlite3-dev libboost-graph-dev liblpsolve55-dev cmake gcc git build-essential

RUN cd /root && wget -O- https://github.com/pezmaster31/bamtools/archive/v2.4.0.tar.gz | tar zx && \
 cd bamtools* && mkdir build && cd build && cmake .. && make && make install && \
 cp /usr/local/bin/* /usr/bin/ && \
 cp -r /usr/local/include/bamtools /usr/include/ && \
 cp -r /usr/local/lib/bamtools /usr/lib/ && \
 cp -r /usr/include/bamtools/* /usr/include/ && \
 cp -r /usr/lib/bamtools/libbamtools.* /usr/lib/

# install augustus
RUN cd /root && wget -O- http://bioinf.uni-greifswald.de/augustus/binaries/augustus.current.tar.gz | tar zx && \
 cd augustus-3.2.2/ && make && make install
RUN cp  /root/augustus-3.2.2/scripts/* /usr/bin/

# install hmmer
RUN cd  && wget -O- http://eddylab.org/software/hmmer3/3.1b2/hmmer-3.1b2-linux-intel-x86_64.tar.gz | tar zx && \
 cd hmmer-3.1b2-linux-intel-x86_64/ && ./configure && make && make install

# install ncbi blast
RUN cd /root && wget -O- https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.5.0+-x64-linux.tar.gz | tar zx  && \
 cp ncbi-blast*/bin/* /usr/bin/

# install busco
RUN cd /root && git clone http://gitlab.com/ezlab/busco && cp busco/*.py /usr/bin/

# make python3 the default python
RUN ln -s /usr/bin/python3 /usr/bin/python

WORKDIR /data

ENTRYPOINT ["BUSCO.py"]

CMD ["--help"]