diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index f697bcbb..a157453c 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -43,6 +43,7 @@ Older versions of models should stay available to enable users to reproduce past 3. **Make Your Changes**: Follow the project's coding standards and conventions. 4. **Test Your Changes**: Ensure your changes work as expected and don't introduce new issues. 5. **Submit a Pull Request (PR)**: + - Open your PR for the dev branch. - Provide a clear and concise description of your changes. - Reference related issues (e.g., “Closes #123”). - Be responsive to feedback during the review process. diff --git a/clients/python/koinapy/grpc.py b/clients/python/koinapy/grpc.py index ab2fab7d..95828dcf 100644 --- a/clients/python/koinapy/grpc.py +++ b/clients/python/koinapy/grpc.py @@ -96,7 +96,7 @@ def _is_server_ready(self): if self.ssl: raise InferenceServerException( "The public koina network seems to be inaccessible at the moment. " - "Please notify ludwig.lautenbacher@tum.de." + "Please notify j.angelis@tum.de." ) from e else: raise InferenceServerException( diff --git a/web/assets/img/denbi-logo.svg b/web/assets/img/denbi-logo.svg new file mode 100644 index 00000000..4b6558c3 --- /dev/null +++ b/web/assets/img/denbi-logo.svg @@ -0,0 +1,514 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/web/assets/img/fz-juelich-logo.svg b/web/assets/img/fz-juelich-logo.svg new file mode 100644 index 00000000..3b765373 --- /dev/null +++ b/web/assets/img/fz-juelich-logo.svg @@ -0,0 +1,14 @@ + + + + + +image/svg+xml + + + + +Logo_FZ_Juellich_RGB_schutzzone_weiss + + + diff --git a/web/components/partials/TheHeader.vue b/web/components/partials/TheHeader.vue index b9623131..fab561e0 100644 --- a/web/components/partials/TheHeader.vue +++ b/web/components/partials/TheHeader.vue @@ -72,7 +72,7 @@ onBeforeUnmount(() => { Compare Spectra
  • - +
  • diff --git a/web/openapi/templates/openapi.yml b/web/openapi/templates/openapi.yml index 9c71120e..1f343281 100644 --- a/web/openapi/templates/openapi.yml +++ b/web/openapi/templates/openapi.yml @@ -15,11 +15,11 @@ info: ``` Koina: Democratizing machine learning for proteomics research Ludwig Lautenbacher, Kevin L. Yang, Tobias Kockmann, et al. - bioRxiv 2024.06.01.596953; doi: https://doi.org/10.1101/2024.06.01.596953 + Nat Commun 16, 9933 (2025). https://doi.org/10.1038/s41467-025-64870-5 ``` version: 0.0.1 contact: - email: Ludwig.Lautenbacher@tum.de + email: j.angelis@tum.de externalDocs: description: Koina GitHub url: https://github.com/wilhelm-lab/koina diff --git a/web/pages/index.vue b/web/pages/index.vue index 086a07c8..31a4b68d 100644 --- a/web/pages/index.vue +++ b/web/pages/index.vue @@ -89,7 +89,7 @@ onUnmounted(() => {

    Koina is a community driven project. It is fuly open-source. - We welcome all contributions and feedback! Feel free to reach out to us or open an issue on our GitHub repository. + We welcome all contributions and feedback! Feel free to reach out to us or open an issue on our GitHub repository.

    @@ -108,7 +108,7 @@ onUnmounted(() => { your Koina instance available via koina.wilhelmlab.org, please contact us via - E-Mail.

    @@ -143,6 +143,12 @@ onUnmounted(() => { UPF logo + + DENBI logo + + + FZ Juelich logo +