pyproject.toml

[build-system]
requires = ["setuptools"]
build-backend = "setuptools.build_meta"

[project]
name = "SWAPS"
version = "0.1.0"
description = "Scan-Wise Activation and Peak Selection"
authors = [
    {name = "Zixuan Xiao", email = "zixuan.xiao@tum.de"},
]
license = {text = "MIT license"}
requires-python = ">=3.10"
classifiers = [
    "Programming Language :: Python :: 3.10",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent"
]
dependencies = [
    "alphabase==1.3.0",
    "alphatims==1.0.8",
    "Bio==1.7.1",
    "biopython==1.83",
    "directlfq==0.2.19",
    "docopt==0.6.2",
    "fire==0.5.0",
    "h5py==3.10.0",
    "IsoSpecPy==2.2.2",
    "joblib==1.3.2",
    "matplotlib==3.7.2",
    "matplotlib_venn==0.11.9",
    "numpy==1.25.0",
    "pandas==2.2.3",
    "peptdeep==1.2.1",
    "plotly==5.9.0",
    "pyjanitor==0.23.1",
    "pyteomics==4.6.2",
    "python-dotenv==1.0.1",
    "scikit_learn==1.3.0",
    "scipy==1.15.1",
    "seaborn==0.13.2",
    "sparse==0.15.1",
    "statsmodels==0.14.0",
    "torch==2.3.0",
    "torcheval==0.0.7",
    "torchvision==0.18.0",
    "tensorboard==2.12.3",
    "tqdm==4.66.5",
    "yacs==0.1.8",
]
[project.scripts]
sbs_runner_ims = "sbs_runner_ims:main"
[project.urls]
Homepage = "https://github.com/wilhelm-lab/SWAPS"


[tool.setuptools.packages.find]
where = ["swaps"]
#exclude = [""]