CNVKit

[laraPPr]

• link to support ticket: 2026011960001061
• website: https://github.com/etal/cnvkit
• installation docs: https://github.com/easybuilders/easybuild-easyconfigs/blob/a88a5a910699eca0ef3d70376e83e35a8ea40973/easybuild/easyconfigs/c/CNVkit/CNVkit-0.9.10-foss-2022b-R-4.2.2.eb#L3
• toolchain: foss/2024a?
• easyblock to use: PythonBundle
• required dependencies:
  • ...
• optional dependencies:
  • ...
• notes:
  • ...
• effort: (TBD)
• other install methods
  • conda: yes (link?) / no
  • container image: yes (link?) / no
  • pre-built binaries (RHEL8 Linux x86_64): yes (link?) / no
  • easyconfig outside EasyBuild: yes / no

[laraPPr]

@pavelToman How far have you gotten with this one. The user has let us know that they installed it themselves so you can drop it.

[pavelToman]

@pavelToman How far have you gotten with this one. The user has let us know that they installed it themselves so you can drop it.

Almost done! I am just installing it and gonna create the PR if it is ok

[laraPPr]

Yeah no problem. That's alright if your not stuck on anything feel free to finish it.

[pavelToman]

PR:

• {bio}[foss/2024a] CNVkit v0.9.12 w/ R 4.4.2 easybuilders/easybuild-easyconfigs#25176